Science Immunology

Supplementary Materials

The PDF file includes:

  • Legends for table S1 and S3
  • Table S2. Number of cells in each cluster across different experimental conditions (10x RNA-seq data).
  • Fig. S1. Expression of marker genes in human ILCs.
  • Fig. S2. QC of 10x data.
  • Fig. S3. Heatmaps with expression of marker genes in lck+ cells collected from rag1−/− gut.
  • Fig. S4. t-SNE plots with expression of marker genes in lck+ cells collected from rag1−/− gut.
  • Fig. S5. Identification of nitrrorc+ and nitr+rorc+ population of cells.
  • Fig. S6. PBS-, V. anguillarum–, and A. simplex–injected rag1−/− mutant zebrafish aligned datasets.
  • Fig. S7. Identification of immune cell types in zebrafish during steady-state hematopoiesis.
  • Fig. S8. QC of SmartSeq2 data.
  • Fig. S9. Clustering of Smart-seq2 data from Tg(lck:EGFP), Tg(cd4-1:mCherry), and Tg(mhc2dab:GFP, cd45:dsRed) zebrafish transgenic lines.

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Other Supplementary Material for this manuscript includes the following:

  • Table S1 (Microsoft Excel format). TraCeR and BraCeR analysis.
  • Table S3 (Microsoft Excel format). Index sorting data.

Files in this Data Supplement: