Science Immunology

The PDF file includes:

  • Fig. S1. Establishing a system for epitope identification by APC cytokine capture.
  • Fig. S2. Engineered APCs capture cytokine in an HLA class I or II epitope–specific manner.
  • Fig. S3. Identification of a target epitope from a pooled oligonucleotide library.
  • Fig. S4. Scale-up to identify a targeted neoepitope from an oligonucleotide array.
  • Fig. S5. Fine mapping epitope sequences using tiled encoded peptides.
  • Fig. S6. Identification of epitopes targeted by orphan TCRs.
  • Fig. S7. Identification of epitopes targeted by orphan, class II–restricted TCRs.
  • Table S1. List of primers.
  • Table S2. List of encoded peptides.
  • Table S3. List of cDNA sequences.
  • Table S4. List of TCR sequences.
  • Table S5. HLA binding affinity predictions.

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Other Supplementary Material for this manuscript includes the following:

  • Table S6. Sequencing reads from screens (Excel spreadsheet).
  • Table S7. Sources of putative CMV-targeting TCRs (Excel spreadsheet).
  • Table S8. Raw data file (Excel spreadsheet).